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Substitution models (sequence to distance transformation)

Paste your sequences in the sequential Phylip format (no spaces in the species names; at least one space is required in the end of a species name) into the window :
File Pasted


Data example in the sequential Phylip format

Select substitution model
Substitution model

Parameters for sequences model
Penalty of gap :
Ignore missing bases
PEMV estimation of missing bases values

Jukes,T.H. and Cantor,C.R. (1969) Evolution of Protein Molecules. In Munro,H.N. (ed.), Mammalian protein metabolism. New York: Academic Press. pp. 21–123.

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Boc, A., Diallo, Alpha B. and Makarenkov, V. (2012), T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks, Nucleic Acids Research, 40(W1), W573-W579.

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