Tree Inference

Distance methods

Parsimony

Maximum Likelihood
Neighbor-Joining[doc]
ADDTREE[doc]
Unweighted Neighbor Joining [doc]
Circular order reconstruction[doc]
Weighted least-squares (MW)[doc]
BIONJ [doc]
FITCH (PHYLIP)[doc]
DNAPARS (PHYLIP)[doc]
PROTPARS (PHYLIP)[doc]
PARS (PHYLIP)[doc]
DOLLOP (PHYLIP)[doc]
PHYML[doc]
DNAML (PHYLIP)[doc]
DNAMLK (PHYLIP)[doc]
PROML (PHYLIP)[doc]
PROMLK (PHYLIP)[doc]










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Makarenkov, V. 2001.T-Rex: reconstructing and visualizing phylogenetic trees and reticulation networks, Bioinformatics 17, 664-668.

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